Journal Article Reference-free inference of tumor phylogenies from single-cell sequencing data (vol 16, S7, 2015) 2016 • BMC Genomics • 17: Subramanian A, Schwartz R
Journal Article A simplicial complex-based approach to unmixing tumor progression data 2015 • BMC Bioinformatics • 16: Roman T, Nayyeri A, Fasy BT, Schwartz R
Journal Article Applying Derivative-Free Optimization to Fit Kinetic Parameters of Viral Capsid Self-Assembly Models from Multi-Source Bulk in vitro Data 2015 • Biophysical Journal • 108(2):470A-471A Xie L, Smith G, Schwartz R
Journal Article Computationally Projecting the Influence of Nucleic Acid on Pathways of Nucleation-Limited Virus Capsid Assembly 2015 • Biophysical Journal • 108(2):319A-319A Smith GR, Xie L, Schwartz R
Journal Article Identification of Novel Mutations by Exome Sequencing in African American Colorectal Cancer Patients 2015 • Cancer • 121(1):34-42 Ashktorab H, Daremipouran M, Devaney J, Varma S, Rahi H, Lee E, Shokrani B, Schwartz R, Nickerson ML, Brim H
Conference Improved deconvolution of heterogeneous tumor data to reconstruct clonal evolution from bulk genomic samples 2015 • Cancer Research • 75: Roman T, Schwartz R
Journal Article Inferring models of multiscale copy number evolution for single-tumor phylogenetics 2015 • Bioinformatics • 31(12):258-267 Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schaeffer AA, Schwartz R
Journal Article Machine Learning Approaches for Predicting Radiation Therapy Outcomes: A Clinician's Perspective 2015 • International Journal of Radiation Oncology Biology Physics • 93(5):1127-1135 Kang J, Schwartz R, Flickinger J, Beriwal S
Conference Reconstructing evolutionary models of tumor progression from single-cell heterogeneity data 2015 • Cancer Research • 75: Chowdhury SA, Gertz EM, Wangsa D, Heselmeyer-Haddad K, Ried T, Schaeffer A, Schwartz R
Conference Reference-free inference of tumor phylogenies from single-cell sequencing data 2015 • BMC Genomics • 16: Subramanian A, Schwartz R
Conference Single-cell genetic analysis reveals insights into clonal development of cervical cancer and confirms TERC as an early and dominant aberration 2015 • Cancer Research • 75: Hernandez LS, Bradley A, Gaiser T, Andersson S, Gertz EM, Chowdhury SA, Schwartz R, Schaeffer A, Heselmeyer-Haddad K, Ried T
Journal Article Structurally Governed Cell Mechanotransduction through Multiscale Modeling 2015 • Scientific Reports • 5: Kang J, Puskar KM, Ehrlicher AJ, LeDuc PR, Schwartz RS
Journal Article A Novel Subset of Human Tumors That Simultaneously Overexpress Multiple E2F-responsive Genes Found in Breast, Ovarian, and Prostate Cancers 2014 • Cancer Informatics • 13:89-100 Shackney S, Chowdhury S, Schwartz R
Journal Article Algorithms to Model Single Gene, Single Chromosome, and Whole Genome Copy Number Changes Jointly in Tumor Phylogenetics 2014 • PLoS Computational Biology • 10(7): Chowdhury SA, Shackney SE, Heselmeyer-Haddad K, Ried T, Schaeffer AA, Schwartz R
Journal Article Applying Molecular Crowding Models to Simulations of Virus Capsid Assembly <i>In Vitro</i> 2014 • Biophysical Journal • 106(1):310-320 Smith GR, Xie L, Lee B, Schwartz R
Journal Article Bioinformatics Curriculum Guidelines: Toward a Definition of Core Competencies 2014 • PLoS Computational Biology • 10(3): Welch L, Lewitter F, Schwartz R, Brooksbank C, Radivojac P, Gaeta B, Schneider MV
Conference Evaluating the Influence of Environment on Virus Capsid Assembly Pathways through Stochastic Simulation 2014 • Biophysical Journal • 106(2):61A-61A Smith GR, Xie L, Lee B, Schwartz R
Conference Inferring evolutionary models of tumor progression from single-cell heterogeneity data 2014 • Cancer Research • 74(19): Chowdhury SA, Subramanian A, Schaeffer AA, Shackney SE, Wangsa D, Heselmeyer-Haddad K, Ried T, Schwartz R
Journal Article Network and Pathway Analysis of Cancer Susceptibility (A) 2014 • Cancer Informatics • 13:125-127 Guo N, Schwartz R, Qian J, Jia P, Deng Y
Journal Article Phenotypic Signatures Arising from Unbalanced Bacterial Growth 2014 • PLoS Computational Biology • 10(8): Tan C, Smith RP, Tsai M-C, Schwartz R, You L
Conference Reference-free Inference of Tumor Phylogenies from Single-Cell Sequencing Data 2014 • IEEE ... International Conference on Computational Advances in Bio and Medical Sciences : [proceedings]. IEEE International Conference on Computational Advances in Bio and Medical Sciences Subramanian A, Schwartz R
Journal Article Reply to 'Complexity of molecular crowding in cell-free enzymatic reaction networks' 2014 • Nature Nanotechnology • 9(6):407-+ Tan C, Saurabh S, Bruchez MP, Schwartz R, LeDuc P
Journal Article Single-Cell Genetic Analysis Reveals Insights into Clonal Development of Prostate Cancers and Indicates Loss of PTEN as a Marker of Poor Prognosis 2014 • American Journal of Pathology • 184(10):2671-2686 Heselmeyer-Haddad KM, Garcia LYB, Bradley A, Hernandez L, Hu Y, Habermann JK, Dumke C, Thorns C, Perner S, Pestova E, Burke C, Chowdhury SA, Schwartz R, Schaeffer AA, Paris PL, Ried T
